We have adopted the Augustus V5.0 gene models for Chlamydomonas reinhardtii. The Enzyme Commission number (EC number) is a numerical classification scheme for enzymes assigned by IUPAC-IUBMB. It is based on the chemical reactions that enzymes catalyze. Utilizing Enzyme nomenclature database from Swiss Institute of Bioinformatics (SIB), we have annotated Augustus protein sequences. The Gene Ontology provides a controlled vocabulary (ontologies) to describe genes and their products in a species-independent manner. The GO project has developed three structured ontologies that describe gene products in terms of their associated biological processes (P), cellular components (C) and molecular functions (F). Taking advantage of GO annotation of the UniProt Knowledgebase (UniProtKB:UniProtKB/Swiss-Prot and UniProtKB/TrEMBL) - the central information hub for the collection of functional information on proteins, we have annotated Augustus acid sequences using sequence similarity search. KEGG is a database of biological systems, consisting of genetic building blocks of genes and proteins (KEGG GENES), chemical building blocks of both endogenous and exogenous substances (KEGG LIGAND), molecular wiring diagrams of interaction and reaction networks (KEGG PATHWAY), and hierarchies and relationships of various biological objects (KEGG BRITE). It provides a reference knowledge base for linking genomes to biological systems and also to environments by the processes of PATHWAY mapping and BRITE mapping. Focusing on KEGG PATHWAY database and GENES database, we annotated Augustus protein sequences with KEGG pathway maps and modules, as well as KEGG ORTHOLOGY information. In addition, Chlamy amino acid sequences predicted by Augustus have been scanned for protein domain signatures using InterProScan. All the annotation results are presented in searcheable format and integrated seamlessly with host databases. |
 EC Annotation |
| GO Annotation |
| KEGG Annotation |
| InterProScan Annotation |
