Currently, Chlamy EST-Genome-Browser houses 7,467 high-quality, putative polymorphisms of more than one nucleotide that cover all 88 chromosomes or scaffolds, based on JGI Chlamy draft genome release 4.0. Among over 270,000 high-quality EST-genome mapping hits, we extensively tracked base differences, i.e., insertions, deletions or mismatches between each individual ESTs and the genome sequences. Then, continuous or concatenated base differences that have at least 5 EST occurances are identified as high-quality, putative polymorphisms other than SNPs. You can search through all the polymorphisms, examine relevant EST-genome alignments and their gene structures. |
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