WebTraceMiner Configuration
If you want to use our demo data, please click "Save Configuration" to proceed with default settings.   For general users to process their own data, the only required configuration is in the "Adapter and Restriction Enzyme Site" section.
      Global Settings Help Help      
  Config Name: Command Dir:
  Debug Mode: Process Dir:
  Trace Type: Parameter Dir:
      Base Calling Help Help
  Phred:
  Staden Package io_lib:
 
  Version:
  Parameter:
  Nice:
  Phd2fasta:
View current Phred parameters
  Upload Parameter:
 
  Version: 1.9.0
 
      Quality Trimming Help Help
  Min Length: Moving Window: (size)
  Qual Threshold: Threshold: (threshold, 13-18)
      Vector Screening Help Help
  Cross_Match
  Vmatch
  BLAST
 
  Executable:
  -minmatch:
  -minscore:
  -penalty:
 
  Executable:
 
-l minmatch: (Min Match Length)
-identity:
-h :    (Hamming Distance)
 
  Executable:
  Parameter:
 
  Vector Folder:
  Vector File:
  Vector Detect:
  Upload Vector:
      Adapter and Restriction Enzyme Site Help Help
  Adaptor 1: Enzyme 1:
  Adaptor 2: Enzyme 2:
  Error Base: Error Base:
Need new adapter or restriction enzyme? Please send us an email.
      Poly(A)/(T) Detection Help Help
  Poly A: Poly T:
  -minlength: -minlength:
  -maxmismatch: -maxmismatch:
      EST Direction Help Help
  Non-directional:  
  Directional:  
 OK
 
  Perl Regular Expression:
  3' EST:
  5' EST:
 
  Upload EST Direction File:
  5' EST:
  3' EST:

    You must save the configuration before you can proceed with the next step.